Variant report

Variant	rs967018
Chromosome Location	chr4:54344411-54344412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54319802..54322613-chr4:54343066..54345162,2	K562	blood:
2	chr4:54340192..54342016-chr4:54343724..54345508,2	K562	blood:
3	chr4:54340153..54341692-chr4:54343827..54345508,2	K562	blood:

rs_ID	r²[population]
rs10011259	0.81[YRI][hapmap]
rs10013573	1.00[YRI][hapmap]
rs10028214	0.94[YRI][hapmap]
rs1014056	1.00[YRI][hapmap]
rs11133267	1.00[YRI][hapmap]
rs12499401	0.96[YRI][hapmap]
rs1514387	0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1514388	0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1514389	0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17082887	1.00[EUR][1000 genomes]
rs17082936	1.00[EUR][1000 genomes]
rs2128103	1.00[YRI][hapmap]
rs2412488	0.80[YRI][hapmap]
rs3765158	0.80[YRI][hapmap]
rs3817270	1.00[YRI][hapmap]
rs3946758	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs41397545	1.00[EUR][1000 genomes]
rs4864763	1.00[EUR][1000 genomes]
rs6420001	1.00[YRI][hapmap]
rs6554095	1.00[YRI][hapmap]
rs6554096	1.00[YRI][hapmap]
rs6554099	0.81[YRI][hapmap]
rs6554106	0.80[YRI][hapmap]
rs6554108	1.00[YRI][hapmap]
rs6852884	0.87[YRI][hapmap]
rs7681753	1.00[EUR][1000 genomes]
rs7684450	1.00[YRI][hapmap]
rs997832	0.86[YRI][hapmap]
rs9992820	1.00[YRI][hapmap]
rs9997844	1.00[YRI][hapmap]

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54320000-54353200	Weak transcription	Gastric	stomach
2	chr4:54327600-54347800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:54329600-54351000	Weak transcription	Adipose Nuclei	Adipose
7	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
8	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
9	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
10	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:54338400-54347400	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:54341400-54347800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:54341800-54345800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:54341800-54348000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:54342000-54348200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:54342400-54347000	Enhancers	HSMM	muscle
17	chr4:54342600-54345200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:54342600-54347800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:54342800-54360600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:54343000-54345800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:54343000-54346800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
23	chr4:54343200-54344800	Weak transcription	Fetal Intestine Small	intestine
24	chr4:54343200-54345200	Weak transcription	K562	blood
25	chr4:54343200-54345400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:54343200-54345400	Weak transcription	A549	lung
27	chr4:54343200-54345800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:54343200-54347800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr4:54343200-54348000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
31	chr4:54343400-54344600	Weak transcription	Liver	Liver
32	chr4:54343400-54345400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:54343400-54345600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr4:54343400-54346600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:54343400-54347000	Weak transcription	Pancreas	Pancrea
36	chr4:54343400-54347600	Enhancers	NH-A	brain
37	chr4:54343400-54347800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:54343400-54347800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr4:54343400-54347800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:54343400-54347800	Enhancers	Osteobl	bone
41	chr4:54343400-54352200	Weak transcription	Esophagus	oesophagus
42	chr4:54343400-54363000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:54343600-54345400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr4:54343600-54347200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:54343600-54347400	Enhancers	NHDF-Ad	bronchial
46	chr4:54343600-54348000	Enhancers	HMEC	breast
47	chr4:54343600-54352600	Weak transcription	Placenta	Placenta
48	chr4:54343600-54364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:54343800-54344800	Weak transcription	HSMMtube	muscle
50	chr4:54343800-54345800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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