Variant report

Variant	rs6554100
Chromosome Location	chr4:54240108-54240109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:54240040-54240190	AG09309	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54238373..54240909-chr4:54242022..54244053,2	MCF-7	breast:

Variant related genes	Relation type
FIP1L1	TF binding region
ENSG00000145216	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10000746	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10001201	0.88[EUR][1000 genomes]
rs10007903	0.81[EUR][1000 genomes]
rs10011259	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10017903	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10021541	0.88[EUR][1000 genomes]
rs10028142	0.82[EUR][1000 genomes]
rs1021099	0.88[EUR][1000 genomes]
rs11133266	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11722866	0.83[EUR][1000 genomes]
rs11723755	0.83[EUR][1000 genomes]
rs11725230	0.83[EUR][1000 genomes]
rs11731499	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734039	0.88[EUR][1000 genomes]
rs11947256	0.88[EUR][1000 genomes]
rs12649718	0.88[EUR][1000 genomes]
rs1471597	0.88[EUR][1000 genomes]
rs1481819	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531748	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1600795	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17082782	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17520800	0.82[EUR][1000 genomes]
rs2090117	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2271554	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412447	0.88[EUR][1000 genomes]
rs2412488	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28414913	0.82[EUR][1000 genomes]
rs28579268	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35499169	0.87[EUR][1000 genomes]
rs3765158	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3811782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811785	0.82[EUR][1000 genomes]
rs4864759	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4864760	0.88[EUR][1000 genomes]
rs56998298	0.88[EUR][1000 genomes]
rs6554104	0.88[EUR][1000 genomes]
rs6554105	0.88[EUR][1000 genomes]
rs6554106	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6825364	0.81[EUR][1000 genomes]
rs6827269	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6828559	0.83[EUR][1000 genomes]
rs6833766	0.83[EUR][1000 genomes]
rs6834934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848887	0.87[EUR][1000 genomes]
rs6852884	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857869	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7655975	0.88[EUR][1000 genomes]
rs7682199	0.80[EUR][1000 genomes]
rs7686177	0.80[EUR][1000 genomes]
rs7686876	0.88[EUR][1000 genomes]
rs7689981	0.82[EUR][1000 genomes]
rs7690908	0.82[EUR][1000 genomes]
rs7691578	0.83[EUR][1000 genomes]
rs7697622	0.88[EUR][1000 genomes]
rs7698792	0.82[EUR][1000 genomes]
rs931181	0.88[EUR][1000 genomes]
rs931182	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312639	0.82[EUR][1000 genomes]
rs980987	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9995284	0.81[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54233000-54243200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:54238600-54243000	Weak transcription	K562	blood
3	chr4:54239200-54242200	Weak transcription	Colonic Mucosa	Colon

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