Variant report

Variant	rs17082782
Chromosome Location	chr4:54306440-54306441
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54245086..54247077-chr4:54304950..54306474,2	K562	blood:
2	chr4:54300875..54302479-chr4:54305513..54307906,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10000746	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10001201	0.83[EUR][1000 genomes]
rs10005424	0.84[EUR][1000 genomes]
rs10007903	0.85[EUR][1000 genomes]
rs10011259	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10017903	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10021541	0.82[EUR][1000 genomes]
rs10028142	0.86[EUR][1000 genomes]
rs1021099	0.82[EUR][1000 genomes]
rs11133266	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11722866	0.88[EUR][1000 genomes]
rs11723755	0.88[EUR][1000 genomes]
rs11725230	0.88[EUR][1000 genomes]
rs11731499	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11734039	0.82[EUR][1000 genomes]
rs11734681	0.82[EUR][1000 genomes]
rs11947256	0.82[EUR][1000 genomes]
rs12649718	0.83[EUR][1000 genomes]
rs1471597	0.82[EUR][1000 genomes]
rs1481819	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1481824	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1531748	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1600795	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17520800	0.86[EUR][1000 genomes]
rs2090117	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271554	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2412447	0.82[EUR][1000 genomes]
rs2412488	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414913	0.86[EUR][1000 genomes]
rs28579268	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35499169	0.82[EUR][1000 genomes]
rs36011216	0.82[EUR][1000 genomes]
rs3765158	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811782	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3811785	0.86[EUR][1000 genomes]
rs4864759	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4864760	0.82[EUR][1000 genomes]
rs56998298	0.82[EUR][1000 genomes]
rs6554100	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6554104	0.82[EUR][1000 genomes]
rs6554105	0.82[EUR][1000 genomes]
rs6554106	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6825364	0.85[EUR][1000 genomes]
rs6827269	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833766	0.88[EUR][1000 genomes]
rs6834934	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6848887	0.83[EUR][1000 genomes]
rs6852884	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6857024	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6857869	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6858320	0.85[AFR][1000 genomes]
rs7655975	0.82[EUR][1000 genomes]
rs7682199	0.84[EUR][1000 genomes]
rs7686876	0.83[EUR][1000 genomes]
rs7689981	0.86[EUR][1000 genomes]
rs7690908	0.86[EUR][1000 genomes]
rs7691578	0.87[EUR][1000 genomes]
rs7697622	0.83[EUR][1000 genomes]
rs7698792	0.86[EUR][1000 genomes]
rs931181	0.83[EUR][1000 genomes]
rs931182	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs980987	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9995284	0.85[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
2	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
3	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
4	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
5	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
6	chr4:54256600-54319200	Weak transcription	Gastric	stomach
7	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:54268400-54319800	Weak transcription	A549	lung
10	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
11	chr4:54270200-54316600	Weak transcription	Esophagus	oesophagus
12	chr4:54276400-54319000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:54276600-54319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:54276600-54319000	Weak transcription	Lung	lung
15	chr4:54276800-54310600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:54276800-54316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:54286200-54310800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:54286200-54316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:54287800-54310400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:54288200-54307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:54288200-54310800	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:54291000-54310600	Weak transcription	Right Ventricle	heart
24	chr4:54291400-54313200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:54291800-54315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:54292000-54314400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr4:54294000-54325600	Weak transcription	Fetal Heart	heart
30	chr4:54294400-54309200	Weak transcription	NHEK	skin
31	chr4:54294400-54320600	Weak transcription	HSMMtube	muscle
32	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
33	chr4:54295400-54316600	Weak transcription	Ovary	ovary
34	chr4:54295600-54310400	Weak transcription	Brain Angular Gyrus	brain
35	chr4:54295600-54311400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:54295600-54316600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr4:54295600-54319800	Weak transcription	Brain Anterior Caudate	brain
38	chr4:54295600-54339400	Weak transcription	Fetal Brain Male	brain
39	chr4:54296600-54308600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr4:54296800-54320400	Weak transcription	Brain Germinal Matrix	brain
41	chr4:54297200-54310600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:54297400-54309200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr4:54297400-54310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:54297400-54312600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:54297400-54312800	Strong transcription	Primary T cells from cord blood	blood
46	chr4:54297400-54319200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr4:54297400-54319200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr4:54297400-54319200	Weak transcription	NH-A	brain
49	chr4:54297600-54308600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr4:54297600-54310400	Weak transcription	Stomach Smooth Muscle	stomach

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