Variant report

Variant	rs36011216
Chromosome Location	chr4:54350726-54350727
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10001201	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10005424	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10007903	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10011394	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10021541	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10028142	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10032903	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1021099	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11133276	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11722866	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11723755	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11725230	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11734039	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11734681	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11947256	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12507563	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12507739	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12508701	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12511088	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12511253	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12642403	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12649718	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13150384	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1471597	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17082782	0.82[EUR][1000 genomes]
rs17082893	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082923	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17520800	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2090117	0.82[EUR][1000 genomes]
rs2271558	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2271559	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2412447	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2412488	0.83[EUR][1000 genomes]
rs28414913	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28459503	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35089837	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35499169	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35978987	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3765158	0.83[EUR][1000 genomes]
rs3811785	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4864760	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4864767	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56998298	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57297394	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6554104	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6554105	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6818788	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822201	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6825364	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6827269	0.83[EUR][1000 genomes]
rs6828559	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6832626	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6833442	0.82[AFR][1000 genomes]
rs6833766	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6838260	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6839922	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6840343	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6840530	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6843529	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6848887	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7655975	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7682199	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7686177	0.81[AMR][1000 genomes]
rs7686876	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7688853	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7689981	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7690908	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7691578	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7691892	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7697622	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7698792	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs931181	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9312639	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9995284	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9996883	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54320000-54353200	Weak transcription	Gastric	stomach
2	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
5	chr4:54329600-54351000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
7	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
8	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
9	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:54342800-54360600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
12	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
13	chr4:54343400-54352200	Weak transcription	Esophagus	oesophagus
14	chr4:54343400-54363000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:54343600-54352600	Weak transcription	Placenta	Placenta
16	chr4:54343600-54364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:54345600-54352200	Weak transcription	Fetal Intestine Small	intestine
18	chr4:54345800-54351000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:54345800-54355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:54346000-54356400	Weak transcription	HSMMtube	muscle
21	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
22	chr4:54347200-54351000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:54347800-54351000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:54347800-54355000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:54348000-54353400	Weak transcription	Pancreas	Pancrea
27	chr4:54348000-54355600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:54348000-54362200	Weak transcription	Fetal Intestine Large	intestine
29	chr4:54348200-54359600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:54349000-54360000	Weak transcription	Liver	Liver
31	chr4:54349600-54352200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:54349800-54351600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:54349800-54352200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:54350000-54353400	Enhancers	Ovary	ovary
35	chr4:54350400-54350800	Weak transcription	Osteobl	bone
36	chr4:54350400-54355200	Weak transcription	HMEC	breast
37	chr4:54350600-54351400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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