Variant report

Variant	rs10011394
Chromosome Location	chr4:54355067-54355068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54353594..54355161-chr4:54356979..54358658,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10001201	0.81[ASN][1000 genomes]
rs10005424	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10007903	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10021541	0.81[ASN][1000 genomes]
rs10028142	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10032903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021099	0.80[ASN][1000 genomes]
rs11133276	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11722866	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11723755	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11725230	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11734039	0.81[ASN][1000 genomes]
rs11734681	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11947256	0.83[ASN][1000 genomes]
rs12507563	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507739	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12508701	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511088	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12511253	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12642403	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13150384	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471597	0.80[ASN][1000 genomes]
rs17082893	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082923	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17520800	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2271558	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2271559	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2412447	0.81[ASN][1000 genomes]
rs28414913	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28459503	0.81[ASN][1000 genomes]
rs35089837	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35499169	0.81[ASN][1000 genomes]
rs35978987	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36011216	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3811785	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4864760	0.81[ASN][1000 genomes]
rs4864767	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56998298	0.80[ASN][1000 genomes]
rs57297394	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6554104	0.81[ASN][1000 genomes]
rs6554105	0.83[ASN][1000 genomes]
rs6818788	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822201	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6825364	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6828559	0.80[ASN][1000 genomes]
rs6832626	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6833766	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6838260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839922	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6840343	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6840530	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6843529	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6848887	0.81[ASN][1000 genomes]
rs7655975	0.81[ASN][1000 genomes]
rs7682199	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7686876	0.81[ASN][1000 genomes]
rs7688853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689981	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7690908	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7691578	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7691892	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7697622	0.81[ASN][1000 genomes]
rs7698792	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs931181	0.80[ASN][1000 genomes]
rs9995284	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9996883	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
4	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
5	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
6	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
7	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:54342800-54360600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
10	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
11	chr4:54343400-54363000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:54343600-54364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:54345800-54355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:54346000-54356400	Weak transcription	HSMMtube	muscle
15	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
16	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:54348000-54355600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:54348000-54362200	Weak transcription	Fetal Intestine Large	intestine
19	chr4:54348200-54359600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:54349000-54360000	Weak transcription	Liver	Liver
21	chr4:54350400-54355200	Weak transcription	HMEC	breast
22	chr4:54352600-54355200	Enhancers	Fetal Brain Male	brain
23	chr4:54352600-54356800	Strong transcription	Placenta	Placenta
24	chr4:54352800-54355400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:54352800-54361800	Weak transcription	Fetal Intestine Small	intestine
26	chr4:54352800-54362000	Weak transcription	Esophagus	oesophagus
27	chr4:54353400-54357400	Weak transcription	Ovary	ovary
28	chr4:54353600-54362000	Weak transcription	Gastric	stomach
29	chr4:54353600-54362000	Weak transcription	Pancreas	Pancrea
30	chr4:54354400-54356400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:54354600-54358000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:54354800-54356400	Enhancers	NHDF-Ad	bronchial
33	chr4:54354800-54356800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:54354800-54356800	Enhancers	NHLF	lung
35	chr4:54355000-54356400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:54355000-54357000	Enhancers	K562	blood
37	chr4:54355000-54357800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:54355000-54357800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr4:54355000-54357800	Enhancers	Osteobl	bone

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