Variant report

Variant	rs6827269
Chromosome Location	chr4:54320617-54320618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:54320546-54321111	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54319802..54322613-chr4:54343066..54345162,2	K562	blood:
2	chr4:54313806..54316192-chr4:54319788..54322206,2	MCF-7	breast:

Variant related genes	Relation type
FIP1L1	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10000746	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10001201	0.82[EUR][1000 genomes]
rs10005424	0.85[EUR][1000 genomes]
rs10007903	0.86[EUR][1000 genomes]
rs10011259	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10017903	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10021541	0.81[EUR][1000 genomes]
rs10028142	0.88[EUR][1000 genomes]
rs1021099	0.81[EUR][1000 genomes]
rs11133266	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11722866	0.86[EUR][1000 genomes]
rs11723755	0.86[EUR][1000 genomes]
rs11725230	0.86[EUR][1000 genomes]
rs11731499	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11734039	0.81[EUR][1000 genomes]
rs11734681	0.84[EUR][1000 genomes]
rs11947256	0.81[EUR][1000 genomes]
rs12649718	0.82[EUR][1000 genomes]
rs1471597	0.81[EUR][1000 genomes]
rs1481819	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1481824	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1531748	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1600795	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17082782	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17520800	0.88[EUR][1000 genomes]
rs2090117	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271554	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2412447	0.81[EUR][1000 genomes]
rs2412488	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414913	0.88[EUR][1000 genomes]
rs28579268	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35499169	0.81[EUR][1000 genomes]
rs36011216	0.83[EUR][1000 genomes]
rs3765158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811782	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3811785	0.87[EUR][1000 genomes]
rs4864759	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4864760	0.81[EUR][1000 genomes]
rs56998298	0.81[EUR][1000 genomes]
rs6554100	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6554104	0.81[EUR][1000 genomes]
rs6554105	0.81[EUR][1000 genomes]
rs6554106	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6825364	0.86[EUR][1000 genomes]
rs6833766	0.86[EUR][1000 genomes]
rs6834934	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6848887	0.82[EUR][1000 genomes]
rs6852884	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6857024	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6857869	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6858320	0.86[AFR][1000 genomes]
rs7655975	0.81[EUR][1000 genomes]
rs7682199	0.85[EUR][1000 genomes]
rs7686876	0.82[EUR][1000 genomes]
rs7689981	0.85[EUR][1000 genomes]
rs7690908	0.88[EUR][1000 genomes]
rs7691578	0.86[EUR][1000 genomes]
rs7697622	0.82[EUR][1000 genomes]
rs7698792	0.87[EUR][1000 genomes]
rs931181	0.82[EUR][1000 genomes]
rs931182	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs980987	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9995284	0.84[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
2	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
4	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:54294000-54325600	Weak transcription	Fetal Heart	heart
8	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
9	chr4:54295600-54339400	Weak transcription	Fetal Brain Male	brain
10	chr4:54297600-54326200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:54297600-54329600	Strong transcription	Dnd41	blood
12	chr4:54298600-54329600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:54305000-54324600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:54311000-54320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:54311400-54320800	Weak transcription	Right Ventricle	heart
16	chr4:54312000-54321200	Weak transcription	Small Intestine	intestine
17	chr4:54312200-54321000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:54312600-54321000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:54312600-54324800	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:54316000-54321600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:54316400-54329200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:54316600-54322600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:54316800-54332600	Weak transcription	Esophagus	oesophagus
24	chr4:54317200-54331400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr4:54317400-54322000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:54317400-54332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr4:54317800-54329600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr4:54318000-54322200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:54318000-54322400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:54318000-54324200	Strong transcription	K562	blood
31	chr4:54318000-54324400	Strong transcription	Primary T cells from cord blood	blood
32	chr4:54318000-54329200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr4:54318000-54329600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:54318200-54321000	Strong transcription	Liver	Liver
35	chr4:54318200-54321200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:54318200-54321800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:54318200-54322000	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:54318200-54323200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr4:54318200-54323600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:54318200-54323800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:54318200-54329200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr4:54318200-54329200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:54318200-54329800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:54318200-54330200	Strong transcription	Placenta	Placenta
45	chr4:54318400-54324000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:54318400-54324800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:54318400-54326600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:54318400-54327600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:54318400-54328600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:54318400-54329000	Strong transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links