Variant report

Variant	rs28579268
Chromosome Location	chr4:54242515-54242516
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54216475..54218028-chr4:54241567..54243477,2	K562	blood:
2	chr4:54230756..54233682-chr4:54240977..54245711,5	MCF-7	breast:
3	chr4:54231715..54234430-chr4:54240716..54243244,3	MCF-7	breast:
4	chr4:54242110..54243670-chr4:54261563..54263151,2	K562	blood:
5	chr4:54241165..54243159-chr4:54244086..54246156,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184178	Chromatin interaction
ENSG00000145216	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10000746	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10001201	0.85[EUR][1000 genomes]
rs10011259	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10017903	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10021541	0.85[EUR][1000 genomes]
rs1021099	0.85[EUR][1000 genomes]
rs11133266	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11722866	0.81[EUR][1000 genomes]
rs11723755	0.81[EUR][1000 genomes]
rs11725230	0.81[EUR][1000 genomes]
rs11731499	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11734039	0.85[EUR][1000 genomes]
rs11947256	0.85[EUR][1000 genomes]
rs12649718	0.85[EUR][1000 genomes]
rs1471597	0.85[EUR][1000 genomes]
rs1481819	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1481824	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1531748	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1600795	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17082782	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2090117	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2271554	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2412447	0.85[EUR][1000 genomes]
rs2412488	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35499169	0.86[EUR][1000 genomes]
rs3765158	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811782	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864759	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864760	0.85[EUR][1000 genomes]
rs56998298	0.85[EUR][1000 genomes]
rs6554100	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6554104	0.85[EUR][1000 genomes]
rs6554105	0.85[EUR][1000 genomes]
rs6554106	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6827269	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6833766	0.81[EUR][1000 genomes]
rs6834934	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6848887	0.84[EUR][1000 genomes]
rs6852884	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6857024	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857869	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7655975	0.85[EUR][1000 genomes]
rs7686876	0.85[EUR][1000 genomes]
rs7691578	0.80[EUR][1000 genomes]
rs7697622	0.85[EUR][1000 genomes]
rs931181	0.85[EUR][1000 genomes]
rs931182	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs980987	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54233000-54243200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:54238600-54243000	Weak transcription	K562	blood
3	chr4:54240200-54243200	Weak transcription	HSMMtube	muscle
4	chr4:54241200-54243200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:54241400-54243200	Enhancers	Stomach Mucosa	stomach
6	chr4:54241400-54243600	Weak transcription	Gastric	stomach
7	chr4:54241600-54243000	Enhancers	HepG2	liver
8	chr4:54241800-54243200	Enhancers	Fetal Intestine Small	intestine
9	chr4:54242000-54243200	Enhancers	Fetal Intestine Large	intestine
10	chr4:54242200-54243200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:54242400-54243000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:54242400-54243200	Weak transcription	Colonic Mucosa	Colon

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