Variant report

Variant	rs13118112
Chromosome Location	chr4:9794580-9794581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10003216	0.81[EUR][1000 genomes]
rs10004319	0.80[EUR][1000 genomes]
rs10012516	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10013858	0.80[EUR][1000 genomes]
rs10015665	0.84[EUR][1000 genomes]
rs10022923	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11726288	0.83[EUR][1000 genomes]
rs11731100	0.83[EUR][1000 genomes]
rs12507861	0.86[EUR][1000 genomes]
rs12509511	0.85[EUR][1000 genomes]
rs13106539	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13112576	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13124141	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13124305	0.85[EUR][1000 genomes]
rs13129487	0.85[EUR][1000 genomes]
rs13129974	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13141706	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13143667	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13145337	0.85[EUR][1000 genomes]
rs13145733	0.80[EUR][1000 genomes]
rs13148356	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2280206	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2280207	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2280333	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56139970	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6835741	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6841397	0.93[EUR][1000 genomes]
rs7656342	0.86[EUR][1000 genomes]
rs7679464	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7685396	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9685427	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	esv2754610	chr4:9372303-9804524	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
4	nsv1012621	chr4:9456977-9802366	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1012634	chr4:9461218-9802366	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv998043	chr4:9496282-9830208	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
7	nsv878667	chr4:9543673-9903121	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
8	nsv878669	chr4:9551094-9794724	Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
10	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
11	nsv878671	chr4:9766888-9912101	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv964032	chr4:9784827-9802611	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	nsv878672	chr4:9786732-10008305	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9793000-9794600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:9794200-9794600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr4:9794400-9798000	Weak transcription	HMEC	breast

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