Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13110399	0.89[ASN][1000 genomes]
rs13110574	0.89[ASN][1000 genomes]
rs13130808	0.97[ASN][1000 genomes]
rs13133529	0.89[ASN][1000 genomes]
rs13147117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13151017	0.89[ASN][1000 genomes]
rs1532561	0.89[ASN][1000 genomes]
rs34189753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34409557	0.98[ASN][1000 genomes]
rs34623229	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35109062	0.97[ASN][1000 genomes]
rs35809812	0.97[ASN][1000 genomes]
rs56393119	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61276976	0.83[ASN][1000 genomes]
rs61794078	0.98[ASN][1000 genomes]
rs61794079	0.94[ASN][1000 genomes]
rs61794081	0.97[ASN][1000 genomes]
rs61794085	0.89[ASN][1000 genomes]
rs61794125	0.81[ASN][1000 genomes]
rs6836890	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6847526	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6847757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73812504	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73815167	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31034200-31043000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:31041200-31043200	Weak transcription	Aorta	Aorta
3	chr4:31042000-31045400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:31042200-31044000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:31042200-31044000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:31042400-31043400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:31042400-31043800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:31042400-31044000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:31042600-31043400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr4:31042600-31043800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:31042600-31043800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:31042600-31044000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:31042600-31045600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:31042800-31043400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:31042800-31044200	Enhancers	Fetal Heart	heart

Quick Search: