Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13110399	0.94[ASN][1000 genomes]
rs13110574	0.94[ASN][1000 genomes]
rs13120823	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13130808	0.98[ASN][1000 genomes]
rs13133529	0.93[ASN][1000 genomes]
rs13147117	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13151017	0.94[ASN][1000 genomes]
rs1532561	0.93[ASN][1000 genomes]
rs2307	0.82[EUR][1000 genomes]
rs34189753	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34409557	0.94[ASN][1000 genomes]
rs34623229	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35109062	0.98[ASN][1000 genomes]
rs35809812	0.98[ASN][1000 genomes]
rs55707833	0.82[EUR][1000 genomes]
rs59848134	0.82[EUR][1000 genomes]
rs61276976	0.88[ASN][1000 genomes]
rs61794078	0.97[ASN][1000 genomes]
rs61794079	0.95[ASN][1000 genomes]
rs61794081	0.98[ASN][1000 genomes]
rs61794085	0.94[ASN][1000 genomes]
rs61794125	0.86[ASN][1000 genomes]
rs6847757	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73812506	0.81[EUR][1000 genomes]
rs73812507	0.81[EUR][1000 genomes]
rs73812508	0.81[EUR][1000 genomes]
rs73812512	0.82[EUR][1000 genomes]
rs73812515	0.82[EUR][1000 genomes]
rs73812516	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1849493	chr4:31065510-31068042	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31058000-31077200	Weak transcription	Aorta	Aorta
2	chr4:31066400-31088600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:31066600-31069200	Weak transcription	Fetal Heart	heart
4	chr4:31067200-31067400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr4:31067200-31070800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search: