Variant report

Variant	rs131218
Chromosome Location	chr22:31759721-31759722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs131204	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs131206	0.81[AFR][1000 genomes]
rs131208	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs131215	0.81[AFR][1000 genomes]
rs140071	0.81[AFR][1000 genomes]
rs140073	0.81[AFR][1000 genomes]
rs140075	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4820047	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs5753598	0.81[AFR][1000 genomes]
rs5997967	0.81[AFR][1000 genomes]
rs695257	0.81[AFR][1000 genomes]
rs695615	0.81[AFR][1000 genomes]
rs695692	0.81[AFR][1000 genomes]
rs695743	1.00[YRI][hapmap]
rs695757	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31744000-31762200	Weak transcription	Right Atrium	heart
2	chr22:31756400-31763800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr22:31758800-31759800	Weak transcription	HepG2	liver
4	chr22:31759600-31760400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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