Variant report

Variant	rs695257
Chromosome Location	chr22:31823830-31823831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31737150..31739439-chr22:31822511..31824172,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100105	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs131204	1.00[AFR][1000 genomes]
rs131206	1.00[AFR][1000 genomes]
rs131208	1.00[AFR][1000 genomes]
rs131215	1.00[AFR][1000 genomes]
rs131218	0.81[AFR][1000 genomes]
rs140071	1.00[AFR][1000 genomes]
rs140073	1.00[AFR][1000 genomes]
rs140075	1.00[AFR][1000 genomes]
rs4820047	1.00[AFR][1000 genomes]
rs5753598	1.00[AFR][1000 genomes]
rs5997967	1.00[AFR][1000 genomes]
rs695615	1.00[AFR][1000 genomes]
rs695692	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv1063634	chr22:31797004-31921254	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31796600-31830000	Weak transcription	Stomach Mucosa	stomach
2	chr22:31796800-31835600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:31797000-31832000	Strong transcription	Fetal Muscle Leg	muscle
4	chr22:31797000-31836600	Strong transcription	Placenta	Placenta
5	chr22:31797000-31884400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr22:31797000-31884400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr22:31797200-31826800	Strong transcription	Liver	Liver
8	chr22:31797200-31832600	Strong transcription	Fetal Intestine Small	intestine
9	chr22:31797200-31845400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr22:31797200-31846200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr22:31797200-31846400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr22:31797200-31860600	Strong transcription	Fetal Stomach	stomach
13	chr22:31797400-31846800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr22:31797600-31828000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:31797600-31835800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr22:31797800-31832200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr22:31797800-31844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr22:31797800-31846800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr22:31798000-31831800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr22:31798200-31827000	Strong transcription	Stomach Smooth Muscle	stomach
21	chr22:31798200-31831200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr22:31799000-31845400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr22:31799200-31846600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr22:31803600-31844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr22:31804600-31847000	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr22:31805000-31844800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr22:31805600-31844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr22:31806800-31842400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr22:31812000-31842000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr22:31813600-31845000	Strong transcription	Fetal Thymus	thymus
31	chr22:31813800-31824200	Strong transcription	Spleen	Spleen
32	chr22:31814000-31838000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr22:31814000-31841200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr22:31814000-31846400	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr22:31814200-31846800	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr22:31814400-31832000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr22:31814400-31845600	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr22:31814400-31845800	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr22:31814400-31846800	Strong transcription	Fetal Intestine Large	intestine
40	chr22:31814600-31841400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr22:31814600-31841600	Strong transcription	Lung	lung
42	chr22:31814800-31831800	Strong transcription	Adipose Nuclei	Adipose
43	chr22:31814800-31844600	Strong transcription	Thymus	Thymus
44	chr22:31814800-31846600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr22:31815000-31824200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr22:31815000-31841400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr22:31815000-31844600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr22:31815000-31846600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr22:31815000-31846800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr22:31815000-31868200	Strong transcription	Dnd41	blood

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