Variant report

Variant	rs13122643
Chromosome Location	chr4:173436043-173436044
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11132947	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11939125	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103453	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107068	0.89[EUR][1000 genomes]
rs13113495	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142236	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146384	0.88[EUR][1000 genomes]
rs337994	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs338056	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs538624	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7659363	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669065	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508333	chr4:173369686-173447675	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv4607	chr4:173406293-173457588	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv870205	chr4:173409062-173436383	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1026882	chr4:173410691-173441120	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1016549	chr4:173411663-173441120	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv1023134	chr4:173412218-173455427	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1021404	chr4:173413885-173458833	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv263	chr4:173418319-173438806	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
14	esv1838024	chr4:173422260-173441120	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv1813301	chr4:173422510-173441120	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv1811294	chr4:173423656-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv1814617	chr4:173423656-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
18	nsv10613	chr4:173424734-173436613	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
19	nsv596216	chr4:173425609-173438438	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv1804232	chr4:173425609-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv1805934	chr4:173425609-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
22	esv1808400	chr4:173425609-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
23	esv1809547	chr4:173427242-173437677	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173434800-173436600	Enhancers	Hela-S3	cervix
2	chr4:173434800-173437200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:173435600-173436400	Enhancers	NH-A	brain
4	chr4:173436000-173438400	Weak transcription	Placenta Amnion	Placenta Amnion

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