Variant report

Variant	rs13142236
Chromosome Location	chr4:173404269-173404270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173404168..173405809-chr4:173407513..173409648,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10006633	0.83[CEU][hapmap]
rs11132947	0.91[EUR][1000 genomes]
rs11939125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509779	0.88[YRI][hapmap]
rs13103453	0.84[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107068	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13113495	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118772	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13122643	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140679	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13146091	1.00[CEU][hapmap]
rs13146384	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs13150574	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs1455122	0.89[CEU][hapmap]
rs1455123	0.83[CEU][hapmap]
rs1551446	0.83[CEU][hapmap]
rs17225954	0.89[CEU][hapmap];0.88[YRI][hapmap]
rs17226121	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs17233636	0.84[CEU][hapmap]
rs2085207	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs2124204	0.83[CEU][hapmap]
rs2332516	0.83[CEU][hapmap]
rs337981	0.95[CEU][hapmap]
rs337994	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs338005	0.84[CEU][hapmap]
rs338048	0.82[CEU][hapmap]
rs338049	0.82[CEU][hapmap]
rs338052	0.84[CEU][hapmap]
rs338054	0.82[CEU][hapmap]
rs338056	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs538624	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs6812783	0.82[CEU][hapmap]
rs7656178	0.83[CEU][hapmap]
rs7659363	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669065	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686403	0.84[CEU][hapmap]
rs7686995	0.83[CEU][hapmap]
rs7694525	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508333	chr4:173369686-173447675	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3422979	chr4:173402227-173404725	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173402000-173404400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:173403600-173410200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:173403800-173404400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:173403800-173404600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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