Variant report

Variant	rs2085207
Chromosome Location	chr4:173444863-173444864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11132947	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11939125	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509779	0.91[YRI][hapmap]
rs13101363	0.82[YRI][hapmap]
rs13103453	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107068	0.88[EUR][1000 genomes]
rs13113495	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118772	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs13122643	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140679	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs13142236	0.89[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146091	0.90[CEU][hapmap]
rs13146384	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13150574	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs1455122	1.00[CEU][hapmap]
rs1455123	0.95[CEU][hapmap]
rs1551446	0.95[CEU][hapmap]
rs17225954	0.91[YRI][hapmap]
rs17226121	1.00[YRI][hapmap]
rs17233636	0.95[CEU][hapmap]
rs2124204	0.95[CEU][hapmap]
rs2332516	0.95[CEU][hapmap]
rs337981	0.86[CEU][hapmap]
rs337994	0.90[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs338005	0.95[CEU][hapmap]
rs338047	0.90[CEU][hapmap]
rs338048	0.94[CEU][hapmap]
rs338049	0.82[CEU][hapmap]
rs338052	0.95[CEU][hapmap]
rs338054	0.94[CEU][hapmap]
rs338056	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs538624	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6812783	0.94[CEU][hapmap]
rs7656178	0.95[CEU][hapmap]
rs7659363	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669065	0.90[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686403	0.95[CEU][hapmap]
rs7686995	0.95[CEU][hapmap]
rs7694525	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508333	chr4:173369686-173447675	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv4607	chr4:173406293-173457588	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1023134	chr4:173412218-173455427	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1021404	chr4:173413885-173458833	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links