Variant report

Variant	rs338052
Chromosome Location	chr4:173442751-173442752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11132947	0.97[EUR][1000 genomes]
rs11939125	0.88[EUR][1000 genomes]
rs13103453	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13107068	0.88[EUR][1000 genomes]
rs13113495	0.96[EUR][1000 genomes]
rs13118772	0.84[CEU][hapmap]
rs13122643	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13140679	0.85[CEU][hapmap]
rs13142236	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs13146091	0.84[CEU][hapmap]
rs13146384	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs13150574	0.89[CEU][hapmap]
rs1437839	1.00[JPT][hapmap]
rs1455122	0.95[CEU][hapmap]
rs1455123	1.00[CEU][hapmap]
rs1484021	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1551446	1.00[CEU][hapmap]
rs17233636	1.00[CEU][hapmap]
rs2085207	0.95[CEU][hapmap]
rs2124204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2332516	1.00[CEU][hapmap]
rs335967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs335988	1.00[JPT][hapmap]
rs337032	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs337981	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs337994	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs338005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs338047	0.95[CEU][hapmap];0.83[YRI][hapmap]
rs338048	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs338049	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs338054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs338055	1.00[JPT][hapmap]
rs338056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812783	1.00[CEU][hapmap]
rs6839288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6856936	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7656178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7659363	0.95[CEU][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7669065	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7686403	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs7686995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7688360	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7694525	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508333	chr4:173369686-173447675	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv4607	chr4:173406293-173457588	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1023134	chr4:173412218-173455427	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1021404	chr4:173413885-173458833	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links