Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10000772	0.81[EUR][1000 genomes]
rs10006513	0.82[AMR][1000 genomes]
rs10015258	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10017044	0.81[AMR][1000 genomes]
rs1031341	0.81[AMR][1000 genomes]
rs11735887	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1376306	0.82[AMR][1000 genomes]
rs1376307	0.82[AMR][1000 genomes]
rs1450901	0.82[AMR][1000 genomes]
rs1470721	0.82[AMR][1000 genomes]
rs2122640	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2122643	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2345043	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2345044	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2345045	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2345046	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2345047	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2345048	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2345049	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28735546	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28861113	0.83[AMR][1000 genomes]
rs4493573	0.82[AMR][1000 genomes]
rs4860104	0.82[AMR][1000 genomes]
rs4860435	0.82[AMR][1000 genomes]
rs6818785	0.81[AMR][1000 genomes]
rs7656882	0.82[AMR][1000 genomes]
rs969965	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62627800-62635800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:62632200-62636400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:62632600-62635800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr4:62632600-62635800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:62633000-62636800	Active TSS	H9 Cell Line	embryonic stem cell
6	chr4:62633200-62635800	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr4:62633200-62635800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr4:62633400-62635800	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr4:62633400-62636200	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr4:62633400-62636800	Active TSS	H1 Cell Line	embryonic stem cell
11	chr4:62634200-62636400	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr4:62634600-62636600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:62635200-62636800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:62635400-62636800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:62635600-62636800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:62635600-62637000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: