Variant report

Variant	rs28735546
Chromosome Location	chr4:62641105-62641106
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10000772	0.96[EUR][1000 genomes]
rs10006513	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10015258	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10017044	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1031341	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11735887	0.95[ASN][1000 genomes]
rs12509742	0.96[EUR][1000 genomes]
rs13122879	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1376306	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1376307	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1450901	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1470721	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1817052	0.96[EUR][1000 genomes]
rs1901223	0.95[EUR][1000 genomes]
rs2122640	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2122643	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2167280	0.96[EUR][1000 genomes]
rs2345043	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2345044	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2345045	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2345046	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2345047	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345048	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345049	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28861113	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4487384	0.97[EUR][1000 genomes]
rs4493573	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4860104	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4860434	0.97[EUR][1000 genomes]
rs4860435	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6818785	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6855424	0.96[EUR][1000 genomes]
rs7656882	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs969965	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv980206	chr4:62639183-62641506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62637600-62641200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:62637600-62656000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62640000-62641200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:62640400-62641600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:62640600-62641200	Enhancers	Fetal Brain Male	brain
6	chr4:62641000-62641200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:62641000-62641600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr4:62641000-62654200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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