Variant report
| Variant | rs13123406 |
|---|---|
| Chromosome Location | chr4:80128373-80128374 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:80126283..80129035-chr4:80131457..80134013,2 | K562 | blood: | |
| 2 | chr4:80126178..80129035-chr4:80131457..80134013,3 | K562 | blood: | |
| 3 | chr4:80127282..80129956-chr4:80145242..80147317,2 | K562 | blood: | |
| 4 | chr4:80127482..80129518-chr4:80129789..80131371,2 | K562 | blood: | |
| 5 | chr4:80114833..80117563-chr4:80125822..80128575,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LINC01088 | TF binding region |
| ENSG00000249307 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs13137699 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4246715 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4267760 | 1.00[AMR][1000 genomes] |
| rs4305543 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4327511 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4333206 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4443311 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6534220 | 1.00[AFR][1000 genomes] |
| rs6812679 | 0.81[AFR][1000 genomes] |
| rs6847031 | 1.00[AMR][1000 genomes] |
| rs7691709 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000907 | chr4:79838948-80224764 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv879505 | chr4:79887043-80293046 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014428 | chr4:80089712-80132813 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
