Variant report
| Variant | rs4267760 |
|---|---|
| Chromosome Location | chr4:80111806-80111807 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-BMP2K-1 | chr4:80111678-80112054 | l_2674_chr4:80088967-80336103_prostate |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10033632 | 0.81[AFR][1000 genomes] |
| rs13123406 | 1.00[AMR][1000 genomes] |
| rs13137699 | 1.00[AMR][1000 genomes] |
| rs4246715 | 1.00[AMR][1000 genomes] |
| rs4305543 | 1.00[AMR][1000 genomes] |
| rs4309860 | 0.81[AFR][1000 genomes] |
| rs4327511 | 1.00[AMR][1000 genomes] |
| rs4333206 | 1.00[AMR][1000 genomes] |
| rs4443311 | 1.00[AMR][1000 genomes] |
| rs6847031 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7691709 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000907 | chr4:79838948-80224764 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv879505 | chr4:79887043-80293046 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014428 | chr4:80089712-80132813 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
