Variant report

Variant	rs13126776
Chromosome Location	chr4:120973238-120973239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:120973200..120974897-chr4:120987662..120990383,3	K562	blood:
2	chr4:120973210..120976068-chr4:120976112..120978407,2	MCF-7	breast:
3	chr4:120965102..120968292-chr4:120969292..120973289,4	K562	blood:
4	chr4:120964367..120966016-chr4:120972622..120975603,2	K562	blood:

Variant related genes	Relation type
ENSG00000250938	Chromatin interaction
ENSG00000164109	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2058765	0.96[CEU][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs6827271	0.86[ASN][1000 genomes]
rs6842173	0.86[EUR][1000 genomes]
rs7677531	0.84[EUR][1000 genomes]
rs7680584	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv879851	chr4:120942372-120984077	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120962200-120987200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:120966000-120975600	Weak transcription	Dnd41	blood
3	chr4:120966400-120976200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:120970000-120979600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:120971000-120974200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:120971000-120976400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:120971000-120977000	Weak transcription	A549	lung
8	chr4:120971000-120983200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:120971000-120987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:120971200-120973400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:120971200-120973400	Weak transcription	Fetal Stomach	stomach
12	chr4:120971200-120973400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:120971200-120973800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:120971200-120973800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:120971200-120973800	Weak transcription	NH-A	brain
16	chr4:120971200-120973800	Weak transcription	NHDF-Ad	bronchial
17	chr4:120971200-120973800	Weak transcription	Osteobl	bone
18	chr4:120971200-120974000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:120971200-120974000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr4:120971200-120974000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:120971200-120974000	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:120971200-120974000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr4:120971200-120974200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:120971200-120974400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:120971200-120974400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:120971200-120974400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr4:120971200-120974600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:120971200-120974600	Weak transcription	GM12878-XiMat	blood
29	chr4:120971200-120975200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr4:120971200-120975600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:120971200-120975600	Weak transcription	Aorta	Aorta
32	chr4:120971200-120975600	Weak transcription	Fetal Thymus	thymus
33	chr4:120971200-120975600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr4:120971200-120976200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:120971200-120976400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:120971200-120977200	Weak transcription	Psoas Muscle	Psoas
37	chr4:120971200-120978000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr4:120971200-120978200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:120971200-120978200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:120971200-120978200	Weak transcription	K562	blood
41	chr4:120971200-120978400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr4:120971200-120978400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr4:120971200-120978600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:120971200-120979400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:120971200-120979600	Weak transcription	HUVEC	blood vessel
46	chr4:120971200-120980200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:120971200-120980800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:120971200-120980800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:120971200-120981400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr4:120971200-120983200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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