Variant report

Variant	rs6842173
Chromosome Location	chr4:120970292-120970293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13126776	0.84[CEU][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes]
rs1845344	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs2058765	0.85[CEU][hapmap]
rs28830548	0.81[ASN][1000 genomes]
rs7677142	0.81[ASN][1000 genomes]
rs7677531	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7680584	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv879851	chr4:120942372-120984077	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120962200-120987200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:120966000-120975600	Weak transcription	Dnd41	blood
3	chr4:120966400-120976200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:120970000-120971000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:120970000-120979600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:120970200-120970400	Active TSS	NHDF-Ad	bronchial
7	chr4:120970200-120970600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:120970200-120970800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:120970200-120971200	Active TSS	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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