Variant report

Variant	rs13127214
Chromosome Location	chr4:47280556-47280557
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10805154	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12512314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17461466	1.00[CHB][hapmap]
rs17539438	1.00[CHB][hapmap]
rs17539445	1.00[CHB][hapmap]
rs17539459	1.00[CHB][hapmap]
rs2044081	1.00[CHB][hapmap]
rs2165610	1.00[CHB][hapmap]
rs3114087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4635792	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4695199	1.00[CHB][hapmap]
rs6447543	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47272400-47280600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:47273200-47280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:47273600-47280800	Weak transcription	Brain Germinal Matrix	brain
4	chr4:47278200-47280600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:47280000-47281400	Enhancers	Fetal Brain Male	brain
6	chr4:47280000-47281600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr4:47280000-47281800	Enhancers	Fetal Brain Female	brain
8	chr4:47280200-47281800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:47280400-47281000	Enhancers	Brain Hippocampus Middle	brain
10	chr4:47280400-47281200	Enhancers	Brain Cingulate Gyrus	brain
11	chr4:47280400-47281200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:47280400-47281200	Enhancers	Brain Substantia Nigra	brain
13	chr4:47280400-47281600	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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