Variant report

Variant	rs6447543
Chromosome Location	chr4:47273989-47273990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10805154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13127214	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17461466	1.00[CHB][hapmap]
rs17539438	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17539445	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17539459	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2044081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2165610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs3114087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4635792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4695199	1.00[CHB][hapmap]
rs55849892	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6843559	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73247673	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73247675	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73247676	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73247677	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7660967	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47271400-47274400	Enhancers	Fetal Brain Female	brain
2	chr4:47272200-47274200	Enhancers	Brain Cingulate Gyrus	brain
3	chr4:47272400-47280600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:47273000-47274000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr4:47273200-47280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:47273600-47275200	Weak transcription	Fetal Brain Male	brain
7	chr4:47273600-47277200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:47273600-47277400	Weak transcription	Brain Anterior Caudate	brain
9	chr4:47273600-47280400	Weak transcription	Brain Angular Gyrus	brain
10	chr4:47273600-47280800	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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