Variant report

Variant	rs7660967
Chromosome Location	chr4:47215185-47215186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10805154	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17539438	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044081	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635792	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4695199	1.00[ASN][1000 genomes]
rs55849892	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447543	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6843559	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73247673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73247675	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73247676	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73247677	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47209200-47215600	Weak transcription	Fetal Heart	heart
2	chr4:47211600-47217400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:47211800-47216200	Weak transcription	NHLF	lung
4	chr4:47212000-47216200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:47212000-47216200	Weak transcription	HSMMtube	muscle
6	chr4:47212600-47215400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:47212600-47215800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:47213200-47215200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:47213200-47216200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:47213200-47216200	Weak transcription	HMEC	breast
11	chr4:47213200-47216400	Weak transcription	HSMM	muscle
12	chr4:47214200-47215200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:47214200-47218400	Enhancers	NH-A	brain
14	chr4:47214400-47216200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr4:47214600-47215400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:47214600-47216000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:47214600-47226600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:47214800-47215600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:47214800-47216000	Enhancers	Brain Cingulate Gyrus	brain
20	chr4:47215000-47215200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:47215000-47215200	Enhancers	Fetal Stomach	stomach
22	chr4:47215000-47215400	Enhancers	Brain Substantia Nigra	brain
23	chr4:47215000-47215600	Enhancers	Brain Anterior Caudate	brain
24	chr4:47215000-47215600	Enhancers	Brain Hippocampus Middle	brain
25	chr4:47215000-47215800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:47215000-47215800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:47215000-47216200	Enhancers	Osteobl	bone
28	chr4:47215000-47216600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr4:47215000-47218400	Enhancers	Muscle Satellite Cultured Cells	--

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