Variant report
| Variant | rs13130218 |
|---|---|
| Chromosome Location | chr4:19451221-19451222 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10006357 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10017064 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10019078 | 0.94[ASN][1000 genomes] |
| rs1157450 | 0.94[ASN][1000 genomes] |
| rs11731090 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13138468 | 0.88[ASN][1000 genomes] |
| rs1490883 | 0.94[ASN][1000 genomes] |
| rs1490885 | 0.94[ASN][1000 genomes] |
| rs1552660 | 0.94[ASN][1000 genomes] |
| rs1948331 | 0.91[ASN][1000 genomes] |
| rs1948332 | 0.94[ASN][1000 genomes] |
| rs2035778 | 0.94[ASN][1000 genomes] |
| rs2130770 | 0.81[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3967248 | 0.94[ASN][1000 genomes] |
| rs402148 | 0.84[ASN][1000 genomes] |
| rs4404539 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4697641 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6447907 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6447913 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6846574 | 0.94[ASN][1000 genomes] |
| rs6849673 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv593785 | chr4:19092157-19521956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv878732 | chr4:19172031-19660947 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19451000-19455000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
