Variant report

Variant	rs402148
Chromosome Location	chr4:19308445-19308446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10006357	0.84[ASN][1000 genomes]
rs10019078	0.90[ASN][1000 genomes]
rs1157450	0.90[ASN][1000 genomes]
rs11731090	0.84[ASN][1000 genomes]
rs13130218	0.84[ASN][1000 genomes]
rs13138468	0.85[ASN][1000 genomes]
rs1490883	0.90[ASN][1000 genomes]
rs1490885	0.90[ASN][1000 genomes]
rs1552660	0.90[ASN][1000 genomes]
rs17496372	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs1948331	0.88[ASN][1000 genomes]
rs1948332	0.90[ASN][1000 genomes]
rs2035778	0.90[ASN][1000 genomes]
rs2130770	0.90[ASN][1000 genomes]
rs312338	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs312341	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3967248	0.90[ASN][1000 genomes]
rs4404539	0.84[ASN][1000 genomes]
rs4697641	0.84[ASN][1000 genomes]
rs6447907	0.84[ASN][1000 genomes]
rs6846574	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6849673	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829869	chr4:19128282-19310464	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv525057	chr4:19306711-19310352	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19303600-19310000	Weak transcription	NHLF	lung
2	chr4:19307800-19311200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links