Variant report

Variant	rs312338
Chromosome Location	chr4:19299889-19299890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs184322	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2616745	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312341	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs312348	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312349	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312350	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312352	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs312354	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312355	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312360	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312362	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312373	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs312374	0.86[EUR][1000 genomes]
rs364647	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs387995	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs401167	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs402148	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs407986	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs422930	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs427086	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs439014	0.83[AMR][1000 genomes]
rs6815825	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73237805	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461282	chr4:19035608-19304946	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593782	chr4:19035608-19304946	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv878726	chr4:19038807-19304946	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv829869	chr4:19128282-19310464	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19297600-19302800	Weak transcription	NHLF	lung

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