Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10516382	1.00[JPT][hapmap]
rs10516383	0.93[JPT][hapmap]
rs10516384	0.92[JPT][hapmap]
rs11933121	0.93[JPT][hapmap]
rs13117744	0.92[JPT][hapmap]
rs13124591	0.86[JPT][hapmap]
rs13132286	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs13133567	0.92[JPT][hapmap]
rs13137692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141872	0.86[JPT][hapmap]
rs1390266	0.80[JPT][hapmap]
rs1485513	0.92[JPT][hapmap]
rs1587121	0.85[JPT][hapmap]
rs16870851	0.92[JPT][hapmap]
rs16870854	0.89[JPT][hapmap]
rs16870857	0.92[JPT][hapmap]
rs16870858	0.92[JPT][hapmap]
rs16870863	0.92[JPT][hapmap]
rs16870865	0.92[JPT][hapmap]
rs16870875	0.92[JPT][hapmap]
rs16870886	0.86[JPT][hapmap]
rs16870888	0.86[JPT][hapmap]
rs16870895	0.86[JPT][hapmap]
rs16870905	0.92[JPT][hapmap]
rs16870925	1.00[CEU][hapmap]
rs16870934	0.93[JPT][hapmap]
rs16870966	0.85[JPT][hapmap]
rs1872457	0.84[JPT][hapmap]
rs1994984	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap]
rs6448047	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap]
rs73102158	0.84[AFR][1000 genomes]
rs7698713	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv437914	chr4:21292213-21375817	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1005453	chr4:21295066-21454143	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1008816	chr4:21360039-21376839	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21361600-21364200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:21362000-21362800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:21362000-21363400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:21362000-21364000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:21362600-21363400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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