Variant report

Variant	rs16870966
Chromosome Location	chr4:21385209-21385210
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10516383	0.93[JPT][hapmap]
rs10516384	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs11933121	0.93[JPT][hapmap]
rs11935013	0.87[EUR][1000 genomes]
rs13117744	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs13124591	0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs13129012	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13130239	0.85[JPT][hapmap]
rs13133567	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs13137692	0.80[JPT][hapmap]
rs13141449	0.86[JPT][hapmap]
rs13141872	0.93[JPT][hapmap]
rs1485513	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1587121	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs16870851	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16870854	0.90[JPT][hapmap]
rs16870857	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16870858	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16870860	0.85[JPT][hapmap]
rs16870863	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16870865	1.00[GIH][hapmap];0.93[JPT][hapmap]
rs16870875	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16870886	0.93[JPT][hapmap]
rs16870888	0.93[JPT][hapmap]
rs16870895	0.93[JPT][hapmap];1.00[TSI][hapmap]
rs16870905	1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16870916	0.87[EUR][1000 genomes]
rs16870934	0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs16871003	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1872457	0.92[JPT][hapmap]
rs2323002	0.84[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs36012574	0.87[EUR][1000 genomes]
rs4352463	0.84[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs4696978	0.94[AMR][1000 genomes]
rs71607070	0.87[EUR][1000 genomes]
rs71607071	0.87[EUR][1000 genomes]
rs71607073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698713	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005453	chr4:21295066-21454143	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1001768	chr4:21371991-21388664	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2760849	chr4:21372003-21386158	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1002862	chr4:21372271-21388664	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21379600-21386800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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