Variant report

Variant	rs2323002
Chromosome Location	chr4:21373609-21373610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21372485..21375089-chr4:21376184..21378296,2	K562	blood:
2	chr4:21373360..21375651-chr4:21376032..21378469,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10516382	0.84[CHB][hapmap]
rs10516384	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11933121	0.84[CHB][hapmap]
rs11935013	0.87[EUR][1000 genomes]
rs13117744	0.84[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs13124591	0.92[CHB][hapmap];0.87[EUR][1000 genomes]
rs13129012	0.82[JPT][hapmap]
rs13133567	0.84[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs13141449	0.91[CHB][hapmap]
rs13141872	0.84[CHB][hapmap]
rs1485513	0.84[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1587121	0.84[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs16870851	0.84[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16870854	0.86[CHB][hapmap]
rs16870857	0.84[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16870858	0.84[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16870863	0.84[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16870865	0.84[CHB][hapmap];1.00[GIH][hapmap]
rs16870875	0.84[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16870886	0.84[CHB][hapmap]
rs16870888	0.84[CHB][hapmap]
rs16870895	0.84[CHB][hapmap];1.00[TSI][hapmap]
rs16870905	0.84[CHB][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap]
rs16870916	0.87[EUR][1000 genomes]
rs16870934	0.84[CHB][hapmap];0.87[EUR][1000 genomes]
rs16870966	0.84[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871003	0.86[JPT][hapmap]
rs1872457	0.83[CHB][hapmap]
rs1994984	0.88[JPT][hapmap]
rs36012574	0.87[EUR][1000 genomes]
rs4352463	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4696978	0.89[AMR][1000 genomes]
rs6448047	0.88[JPT][hapmap]
rs71607070	0.87[EUR][1000 genomes]
rs71607071	0.87[EUR][1000 genomes]
rs71607073	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7698713	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv437914	chr4:21292213-21375817	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1005453	chr4:21295066-21454143	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1008816	chr4:21360039-21376839	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1001250	chr4:21363584-21376839	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv4267	chr4:21364827-21381632	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3518950	chr4:21367904-21378002	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv2649624	chr4:21368198-21377528	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv2421536	chr4:21368339-21376851	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3518951	chr4:21368404-21377902	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3518945	chr4:21368756-21377899	Enhancers	Chromatin interactive region	n/a	n/a	n/a
13	esv5703	chr4:21368877-21377181	Inactive region	Chromatin interactive region	n/a	n/a	n/a
14	esv2516407	chr4:21368879-21377911	Inactive region	Chromatin interactive region	n/a	n/a	n/a
15	esv1947625	chr4:21368915-21377078	Inactive region	Chromatin interactive region	n/a	n/a	n/a
16	esv3464891	chr4:21368956-21377015	Inactive region	Chromatin interactive region	n/a	n/a	n/a
17	nsv10462	chr4:21368962-21377681	Inactive region	Chromatin interactive region	n/a	n/a	n/a
18	esv3518948	chr4:21368980-21377018	Inactive region	Chromatin interactive region	n/a	n/a	n/a
19	esv3518947	chr4:21368997-21376993	Inactive region	Chromatin interactive region	n/a	n/a	n/a
20	esv3518946	chr4:21369002-21376945	Inactive region	Chromatin interactive region	n/a	n/a	n/a
21	esv3464890	chr4:21369012-21376981	Inactive region	Chromatin interactive region	n/a	n/a	n/a
22	esv3464892	chr4:21369013-21376984	Inactive region	Chromatin interactive region	n/a	n/a	n/a
23	esv3464893	chr4:21369026-21376935	Inactive region	Chromatin interactive region	n/a	n/a	n/a
24	esv3518949	chr4:21369030-21376957	Inactive region	Chromatin interactive region	n/a	n/a	n/a
25	nsv593797	chr4:21369074-21375271	Inactive region	Chromatin interactive region	n/a	n/a	n/a
26	nsv436413	chr4:21369080-21377643	Inactive region	Chromatin interactive region	n/a	n/a	n/a
27	esv3464894	chr4:21369091-21376908	Inactive region	Chromatin interactive region	n/a	n/a	n/a
28	esv3518954	chr4:21369091-21376908	Inactive region	Chromatin interactive region	n/a	n/a	n/a
29	nsv499036	chr4:21369092-21376908	Inactive region	Chromatin interactive region	n/a	n/a	n/a
30	esv9739	chr4:21369093-21377090	Inactive region	Chromatin interactive region	n/a	n/a	n/a
31	nsv822503	chr4:21369102-21377056	Inactive region	Chromatin interactive region	n/a	n/a	n/a
32	nsv514201	chr4:21369146-21376914	Inactive region	Chromatin interactive region	n/a	n/a	n/a
33	nsv966555	chr4:21369452-21376544	Inactive region	Chromatin interactive region	n/a	n/a	n/a
34	esv3467566	chr4:21370554-21376552	Inactive region	Chromatin interactive region	n/a	n/a	n/a
35	esv3467567	chr4:21370554-21376552	Inactive region	Chromatin interactive region	n/a	n/a	n/a
36	nsv1001768	chr4:21371991-21388664	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	esv2763345	chr4:21372003-21376851	Inactive region	Chromatin interactive region	n/a	n/a	n/a
38	esv2760849	chr4:21372003-21386158	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv1812116	chr4:21372039-21376851	Inactive region	Chromatin interactive region	n/a	n/a	n/a
40	nsv442897	chr4:21372039-21376851	Inactive region	Chromatin interactive region	n/a	n/a	n/a
41	nsv1002862	chr4:21372271-21388664	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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