Variant report

Variant	rs13130403
Chromosome Location	chr4:18445792-18445793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10009025	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1075227	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10805363	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10939790	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1382094	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1477885	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1477887	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1477888	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1477889	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1477890	0.86[ASN][1000 genomes]
rs1477891	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1477898	0.88[ASN][1000 genomes]
rs1477900	0.85[ASN][1000 genomes]
rs1477902	0.81[ASN][1000 genomes]
rs1813553	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1827849	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2199577	0.86[ASN][1000 genomes]
rs2199578	0.87[ASN][1000 genomes]
rs2320730	0.82[GIH][hapmap]
rs2616461	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2616462	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2616464	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2616466	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2616473	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2643434	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2643435	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2643436	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2643437	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2643438	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2643452	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2658121	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2658122	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2658124	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6816934	0.83[ASN][1000 genomes]
rs7674574	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7675491	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7696548	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964095	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs985935	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1012283	chr4:18436363-18477654	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13130403	RNF215	trans	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18444600-18446600	Enhancers	Fetal Intestine Large	intestine
2	chr4:18445600-18446000	Enhancers	Fetal Intestine Small	intestine

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