Variant report
| Variant | rs2199577 |
|---|---|
| Chromosome Location | chr4:18540433-18540434 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:18529573..18532422-chr4:18538529..18540448,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10009025 | 0.88[ASN][1000 genomes] |
| rs1075227 | 0.89[ASN][1000 genomes] |
| rs10939790 | 0.88[ASN][1000 genomes] |
| rs13130403 | 0.86[ASN][1000 genomes] |
| rs1382094 | 0.88[ASN][1000 genomes] |
| rs1477885 | 0.89[ASN][1000 genomes] |
| rs1477887 | 0.89[ASN][1000 genomes] |
| rs1477888 | 0.89[ASN][1000 genomes] |
| rs1477889 | 0.89[ASN][1000 genomes] |
| rs1477890 | 0.94[ASN][1000 genomes] |
| rs1477891 | 0.89[ASN][1000 genomes] |
| rs1477898 | 0.97[ASN][1000 genomes] |
| rs1477900 | 0.86[ASN][1000 genomes] |
| rs1477902 | 0.93[ASN][1000 genomes] |
| rs1813553 | 0.89[ASN][1000 genomes] |
| rs1827849 | 0.89[ASN][1000 genomes] |
| rs2199578 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2320730 | 0.84[ASN][1000 genomes] |
| rs2616461 | 0.88[ASN][1000 genomes] |
| rs2616462 | 0.87[ASN][1000 genomes] |
| rs2616464 | 0.89[ASN][1000 genomes] |
| rs2616466 | 0.86[ASN][1000 genomes] |
| rs2616473 | 0.89[ASN][1000 genomes] |
| rs2643426 | 0.84[ASN][1000 genomes] |
| rs2643427 | 0.84[ASN][1000 genomes] |
| rs2643434 | 0.89[ASN][1000 genomes] |
| rs2643435 | 0.89[ASN][1000 genomes] |
| rs2643436 | 0.89[ASN][1000 genomes] |
| rs2643437 | 0.89[ASN][1000 genomes] |
| rs2643438 | 0.89[ASN][1000 genomes] |
| rs2643452 | 0.89[ASN][1000 genomes] |
| rs2658121 | 0.89[ASN][1000 genomes] |
| rs2658122 | 0.88[ASN][1000 genomes] |
| rs2658124 | 0.89[ASN][1000 genomes] |
| rs6816934 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7674574 | 0.88[ASN][1000 genomes] |
| rs7675491 | 0.86[ASN][1000 genomes] |
| rs7696548 | 0.88[ASN][1000 genomes] |
| rs964095 | 0.88[ASN][1000 genomes] |
| rs985935 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003931 | chr4:18241575-18849898 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv533087 | chr4:18362040-19176896 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:18538600-18541400 | Weak transcription | HUVEC | blood vessel |
| 2 | chr4:18539600-18540600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
