Variant report
| Variant | rs13130977 |
|---|---|
| Chromosome Location | chr4:27981653-27981654 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10005600 | 0.81[EUR][1000 genomes] |
| rs10939188 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10939189 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12511537 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1527337 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2041707 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2110511 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2192543 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2192544 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4140907 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4456946 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4692267 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6448555 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6813327 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6825090 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6830557 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6850408 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9884700 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9884762 | 0.89[EUR][1000 genomes] |
| rs9991065 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013877 | chr4:27539626-28051576 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009464 | chr4:27943970-27992849 | ZNF genes & repeats Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:27981400-27982600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
