Variant report

Variant	rs9884700
Chromosome Location	chr4:27980615-27980616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10939188	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10939189	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12511537	1.00[ASN][1000 genomes]
rs13130977	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527337	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2041707	1.00[ASN][1000 genomes]
rs2110511	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2192543	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2192544	1.00[ASN][1000 genomes]
rs4140907	1.00[ASN][1000 genomes]
rs4456946	1.00[ASN][1000 genomes]
rs4692267	1.00[ASN][1000 genomes]
rs6448555	1.00[ASN][1000 genomes]
rs6813327	1.00[ASN][1000 genomes]
rs6825090	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6830557	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6850408	1.00[ASN][1000 genomes]
rs9991065	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009464	chr4:27943970-27992849	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27980400-27981400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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