Variant report

Variant	rs13131136
Chromosome Location	chr4:54158790-54158791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10016091	0.86[MEX][hapmap]
rs11133248	1.00[ASW][hapmap];0.95[LWK][hapmap];0.86[YRI][hapmap]
rs11728872	0.92[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap]
rs12645999	0.81[CEU][hapmap]
rs12649522	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13111251	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap]
rs13117212	0.85[CHB][hapmap]
rs17654608	1.00[ASW][hapmap];0.80[LWK][hapmap]
rs2412401	1.00[ASW][hapmap];0.82[LWK][hapmap]
rs34120962	0.91[ASN][1000 genomes]
rs6834382	0.81[CHB][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.82[YRI][hapmap]
rs7656903	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7675987	0.81[CHB][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54153200-54164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:54153200-54172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:54158400-54158800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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