Variant report
| Variant | rs13131648 |
|---|---|
| Chromosome Location | chr4:133104244-133104245 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12508385 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12510583 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13120191 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs13132233 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13137045 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13144255 | 0.83[AMR][1000 genomes] |
| rs13144856 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13145154 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13151063 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17484687 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17550533 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2133488 | 0.81[EUR][1000 genomes] |
| rs2418554 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62320299 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6825876 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6848838 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6850661 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6850815 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6851371 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9993377 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031888 | chr4:132903485-133355824 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv595445 | chr4:133022641-133338765 | Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv880003 | chr4:133047300-133513991 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv880004 | chr4:133093090-133236522 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv967971 | chr4:133099430-133111610 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv880005 | chr4:133101094-133233538 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:133102000-133110000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
