Variant report

Variant	rs13137045
Chromosome Location	chr4:133101094-133101095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12508385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510583	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13120191	0.83[AMR][1000 genomes]
rs13131648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132233	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144255	0.83[AMR][1000 genomes]
rs13144856	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13145154	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13151063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484687	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17550533	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2133488	0.80[EUR][1000 genomes]
rs2418554	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320299	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6825876	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6848838	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6850661	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850815	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851371	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9993377	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470073	chr4:132902055-133101094	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1031888	chr4:132903485-133355824	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv595445	chr4:133022641-133338765	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv880003	chr4:133047300-133513991	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv880004	chr4:133093090-133236522	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3429674	chr4:133097302-133101700	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv967971	chr4:133099430-133111610	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv880005	chr4:133101094-133233538	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:133100400-133102200	Enhancers	NHEK	skin
2	chr4:133100800-133101400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:133100800-133101800	Enhancers	HUVEC	blood vessel
4	chr4:133100800-133102000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:133100800-133102000	Enhancers	HMEC	breast
6	chr4:133101000-133101400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:133101000-133101400	Flanking Active TSS	NH-A	brain
8	chr4:133101000-133102200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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