Variant report

Variant	rs13135500
Chromosome Location	chr4:118992273-118992274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10020473	0.84[AFR][1000 genomes]
rs10026541	0.80[AFR][1000 genomes]
rs10027013	0.82[AFR][1000 genomes]
rs11098422	0.84[AFR][1000 genomes]
rs11098424	0.80[AFR][1000 genomes]
rs11098425	0.80[AFR][1000 genomes]
rs11722962	0.84[AFR][1000 genomes]
rs11733562	0.84[AFR][1000 genomes]
rs13104129	0.80[AFR][1000 genomes]
rs13125397	0.84[AFR][1000 genomes]
rs13135646	0.84[AFR][1000 genomes]
rs13139875	0.80[AFR][1000 genomes]
rs1994384	0.80[AFR][1000 genomes]
rs2389512	0.82[AFR][1000 genomes]
rs2389515	0.80[AFR][1000 genomes]
rs2389516	0.80[AFR][1000 genomes]
rs2389517	0.80[AFR][1000 genomes]
rs2892787	0.84[AFR][1000 genomes]
rs4558930	0.84[AFR][1000 genomes]
rs4834656	0.80[AFR][1000 genomes]
rs6534082	0.80[AFR][1000 genomes]
rs7677274	0.80[AFR][1000 genomes]
rs7681830	0.80[AFR][1000 genomes]
rs7686670	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879839	chr4:118967196-119010126	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118991600-118992400	Weak transcription	Dnd41	blood

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