Variant report

Variant	rs13137142
Chromosome Location	chr4:87767219-87767220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10017360	0.88[ASN][1000 genomes]
rs10020861	0.82[EUR][1000 genomes]
rs11731586	0.88[ASN][1000 genomes]
rs11935015	0.88[ASN][1000 genomes]
rs11939730	0.88[ASN][1000 genomes]
rs12503661	0.88[ASN][1000 genomes]
rs13106349	0.81[EUR][1000 genomes]
rs13141097	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1374934	0.88[ASN][1000 genomes]
rs1550931	0.88[ASN][1000 genomes]
rs2594281	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2594282	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2594284	0.83[ASN][1000 genomes]
rs2705622	0.88[ASN][1000 genomes]
rs2705623	0.93[ASN][1000 genomes]
rs2705624	0.93[ASN][1000 genomes]
rs2705626	0.83[ASN][1000 genomes]
rs2705627	0.91[ASN][1000 genomes]
rs2922234	0.91[ASN][1000 genomes]
rs4693788	0.98[ASN][1000 genomes]
rs4693789	0.88[ASN][1000 genomes]
rs56414102	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57477100	1.00[ASN][1000 genomes]
rs58275023	0.91[ASN][1000 genomes]
rs6531936	1.00[ASN][1000 genomes]
rs6531937	1.00[ASN][1000 genomes]
rs73838351	1.00[ASN][1000 genomes]
rs7656537	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7663218	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180256	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9654158	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
2	chr4:87757200-87769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:87759000-87768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:87760600-87767600	Enhancers	HMEC	breast
5	chr4:87762600-87768200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:87762800-87768200	Weak transcription	NHDF-Ad	bronchial
7	chr4:87763600-87769400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:87765000-87768000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:87765600-87768200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:87766200-87768200	Enhancers	HUVEC	blood vessel
11	chr4:87766200-87768400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:87766200-87768800	Weak transcription	Esophagus	oesophagus
13	chr4:87767000-87767400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:87767000-87767600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:87767000-87771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:87767200-87767400	Flanking Active TSS	NHEK	skin
17	chr4:87767200-87768000	Weak transcription	Adipose Nuclei	Adipose
18	chr4:87767200-87768200	Weak transcription	Right Atrium	heart
19	chr4:87767200-87769000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:87767200-87769200	Weak transcription	Left Ventricle	heart
21	chr4:87767200-87769400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:87767200-87769400	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links