Variant report

Variant	rs13137527
Chromosome Location	chr2:60265712-60265713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10012657	0.88[ASN][1000 genomes]
rs10033206	0.90[ASN][1000 genomes]
rs10517699	0.96[ASN][1000 genomes]
rs10517704	0.94[ASN][1000 genomes]
rs1105951	0.96[ASN][1000 genomes]
rs11929746	0.93[ASN][1000 genomes]
rs11930091	0.93[ASN][1000 genomes]
rs11934172	0.93[ASN][1000 genomes]
rs11934253	0.93[ASN][1000 genomes]
rs11934257	0.93[ASN][1000 genomes]
rs11935849	0.93[ASN][1000 genomes]
rs11942089	0.92[ASN][1000 genomes]
rs11943118	0.93[ASN][1000 genomes]
rs11943190	0.93[ASN][1000 genomes]
rs11943255	0.93[ASN][1000 genomes]
rs11946960	0.93[ASN][1000 genomes]
rs12331504	0.96[ASN][1000 genomes]
rs12647153	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13103444	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13112184	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13119461	0.93[ASN][1000 genomes]
rs13127518	0.92[ASN][1000 genomes]
rs13135870	0.94[ASN][1000 genomes]
rs13141299	0.93[ASN][1000 genomes]
rs13143542	0.93[ASN][1000 genomes]
rs13144697	0.94[ASN][1000 genomes]
rs1502721	0.90[ASN][1000 genomes]
rs1502742	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1502743	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1604579	0.94[ASN][1000 genomes]
rs2088978	0.93[ASN][1000 genomes]
rs2088979	0.93[ASN][1000 genomes]
rs2102180	0.93[ASN][1000 genomes]
rs28797928	0.93[ASN][1000 genomes]
rs28815883	0.93[ASN][1000 genomes]
rs34078024	0.93[ASN][1000 genomes]
rs34493942	0.93[ASN][1000 genomes]
rs35134080	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35720115	0.94[ASN][1000 genomes]
rs35894513	0.93[ASN][1000 genomes]
rs4579071	0.84[AFR][1000 genomes]
rs4691582	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4691584	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62337280	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6536449	0.96[ASN][1000 genomes]
rs6811908	0.93[ASN][1000 genomes]
rs6828419	0.93[ASN][1000 genomes]
rs6833693	0.93[ASN][1000 genomes]
rs6834320	0.93[ASN][1000 genomes]
rs6835283	0.91[ASN][1000 genomes]
rs6835542	0.93[ASN][1000 genomes]
rs6849152	0.86[ASN][1000 genomes]
rs6852085	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6855621	0.86[ASN][1000 genomes]
rs7655160	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677200	0.83[ASN][1000 genomes]
rs871419	0.96[ASN][1000 genomes]
rs9990633	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869086	chr2:59684680-60676096	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931913	chr2:60026285-61006476	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:60256400-60269400	Weak transcription	Placenta Amnion	Placenta Amnion

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