Variant report

Variant	rs1502742
Chromosome Location	chr4:160528455-160528456
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10004655	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10213093	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10517703	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11100246	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11100247	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1117140	0.90[ASN][1000 genomes]
rs11721796	0.88[ASN][1000 genomes]
rs11730807	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11737328	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12499316	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12512433	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12641814	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12641842	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12641886	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12645511	0.84[ASN][1000 genomes]
rs12647153	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12647897	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12648608	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12648744	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12649393	0.87[ASN][1000 genomes]
rs12711318	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13103444	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13112184	0.85[EUR][1000 genomes]
rs13137527	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13138857	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13138862	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13147870	0.90[ASN][1000 genomes]
rs13340212	0.98[ASN][1000 genomes]
rs13340269	0.98[ASN][1000 genomes]
rs1502718	0.92[ASN][1000 genomes]
rs1502743	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1566701	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1566702	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1566703	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1566704	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1847201	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2047797	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2134423	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2134424	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2221313	0.84[ASN][1000 genomes]
rs28577259	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28713322	0.86[ASN][1000 genomes]
rs2881907	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35134080	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35903720	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3929449	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4303932	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4303935	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4328868	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4346600	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4383572	0.95[ASN][1000 genomes]
rs4499661	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4499662	0.96[ASN][1000 genomes]
rs4550866	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4579071	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4579072	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4610292	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4613519	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4618267	0.80[AFR][1000 genomes]
rs4690953	0.92[ASN][1000 genomes]
rs4691581	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4691582	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4691584	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4691589	0.97[ASN][1000 genomes]
rs4691593	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4691594	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4691595	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4691596	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4691597	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691600	0.92[ASN][1000 genomes]
rs5013975	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62337280	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67111572	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6826570	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6852085	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7655160	0.86[EUR][1000 genomes]
rs7659355	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7675005	0.95[ASN][1000 genomes]
rs7682849	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160516800-160530000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:160524600-160528600	Weak transcription	Pancreas	Pancrea
3	chr4:160526800-160530400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:160527000-160528800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr4:160527400-160536400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:160527600-160528600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr4:160527800-160530000	Enhancers	HMEC	breast
8	chr4:160528200-160528600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:160528200-160528800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr4:160528200-160529600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:160528200-160529800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:160528200-160530000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr4:160528200-160530000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:160528400-160528600	Enhancers	Fetal Intestine Large	intestine
15	chr4:160528400-160530200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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