Variant report
Variant | rs4691581 |
---|---|
Chromosome Location | chr4:160532092-160532093 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10004655 | 0.82[ASN][1000 genomes] |
rs11721796 | 0.85[ASN][1000 genomes] |
rs11730807 | 0.83[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs11737328 | 0.80[ASN][1000 genomes] |
rs12499316 | 0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs12641814 | 0.80[ASN][1000 genomes] |
rs12641842 | 0.81[AMR][1000 genomes] |
rs12641886 | 0.81[AMR][1000 genomes] |
rs12648608 | 0.86[EUR][1000 genomes] |
rs12711318 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13103444 | 0.84[EUR][1000 genomes] |
rs13112184 | 0.80[EUR][1000 genomes] |
rs13138857 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs13138862 | 0.86[ASN][1000 genomes] |
rs13340212 | 0.80[ASN][1000 genomes] |
rs13340269 | 0.80[ASN][1000 genomes] |
rs1502742 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1566701 | 0.80[ASN][1000 genomes] |
rs1566702 | 0.80[ASN][1000 genomes] |
rs1566703 | 0.80[ASN][1000 genomes] |
rs1566704 | 0.80[ASN][1000 genomes] |
rs1847201 | 0.80[AMR][1000 genomes] |
rs2134423 | 0.80[ASN][1000 genomes] |
rs2134424 | 0.80[ASN][1000 genomes] |
rs2221313 | 0.84[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs28577259 | 0.80[ASN][1000 genomes] |
rs28713322 | 0.83[ASN][1000 genomes] |
rs35134080 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs3929449 | 0.80[ASN][1000 genomes] |
rs4303932 | 0.80[ASN][1000 genomes] |
rs4328868 | 0.88[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs4346600 | 0.80[ASN][1000 genomes] |
rs4499661 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs4499662 | 0.80[ASN][1000 genomes] |
rs4536877 | 0.82[ASN][1000 genomes] |
rs4579071 | 0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4610292 | 0.80[ASN][1000 genomes] |
rs4618267 | 0.91[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs4691582 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs4691584 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4691593 | 0.81[AMR][1000 genomes] |
rs4691594 | 0.80[ASN][1000 genomes] |
rs4691595 | 0.80[ASN][1000 genomes] |
rs4691596 | 0.80[ASN][1000 genomes] |
rs4691597 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs5013975 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs56162021 | 0.81[ASN][1000 genomes] |
rs62337280 | 0.84[EUR][1000 genomes] |
rs67111572 | 0.80[ASN][1000 genomes] |
rs6826570 | 0.80[ASN][1000 genomes] |
rs6852085 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7655160 | 0.81[EUR][1000 genomes] |
rs7659355 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs7682849 | 0.87[AFR][1000 genomes];0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1015469 | chr4:160389277-160841619 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv537316 | chr4:160389277-160841619 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv881205 | chr4:160516090-160628006 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:160527400-160536400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
2 | chr4:160530400-160535800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |