Variant report

Variant	rs13340269
Chromosome Location	chr4:160536346-160536347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10004655	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10213093	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10517703	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11100246	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11100247	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1117140	0.92[ASN][1000 genomes]
rs11721796	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11730807	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737328	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12499316	0.98[ASN][1000 genomes]
rs12512433	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12641814	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12641842	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12641886	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12645511	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12647897	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648608	0.99[ASN][1000 genomes]
rs12648744	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12649393	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12711318	0.83[ASN][1000 genomes]
rs13138857	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13138862	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13147870	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13340212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502718	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1502742	0.98[ASN][1000 genomes]
rs1566701	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566702	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566703	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566704	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1847201	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2047797	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2134423	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2134424	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2221313	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28577259	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28713322	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2881907	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35134080	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35903720	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3929449	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4303932	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4303935	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4328868	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4346600	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4383572	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4499661	0.98[ASN][1000 genomes]
rs4499662	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4536877	0.91[EUR][1000 genomes]
rs4550866	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4579071	0.86[ASN][1000 genomes]
rs4579072	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4610292	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4613519	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4618267	0.87[EUR][1000 genomes]
rs4690953	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691581	0.80[ASN][1000 genomes]
rs4691582	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4691584	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4691589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4691593	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4691594	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4691595	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4691596	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4691597	0.98[ASN][1000 genomes]
rs4691600	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5013975	0.98[ASN][1000 genomes]
rs56162021	0.84[EUR][1000 genomes]
rs6536449	0.86[EUR][1000 genomes]
rs67111572	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6826570	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6852085	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655160	0.80[AMR][1000 genomes]
rs7659355	0.99[ASN][1000 genomes]
rs7675005	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677200	0.82[EUR][1000 genomes]
rs7682849	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160527400-160536400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160535800-160536800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:160536200-160537400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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