Variant report

Variant	rs1117140
Chromosome Location	chr4:160589161-160589162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160588470..160591367-chr4:160593037..160595760,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10004655	0.88[ASN][1000 genomes]
rs10213093	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10517703	0.91[ASN][1000 genomes]
rs11100246	0.93[ASN][1000 genomes]
rs11100247	0.93[ASN][1000 genomes]
rs11721796	0.87[ASN][1000 genomes]
rs11730807	0.92[ASN][1000 genomes]
rs11737328	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12499316	0.93[ASN][1000 genomes]
rs12512433	0.93[ASN][1000 genomes]
rs12641814	0.93[ASN][1000 genomes]
rs12641842	0.93[ASN][1000 genomes]
rs12641886	0.93[ASN][1000 genomes]
rs12645511	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12647897	0.93[ASN][1000 genomes]
rs12648608	0.93[ASN][1000 genomes]
rs12648744	0.93[ASN][1000 genomes]
rs12649393	0.93[ASN][1000 genomes]
rs13138857	0.86[ASN][1000 genomes]
rs13138862	0.86[ASN][1000 genomes]
rs13147870	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13340212	0.92[ASN][1000 genomes]
rs13340269	0.92[ASN][1000 genomes]
rs1502718	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1502742	0.90[ASN][1000 genomes]
rs1566701	0.93[ASN][1000 genomes]
rs1566702	0.93[ASN][1000 genomes]
rs1566703	0.93[ASN][1000 genomes]
rs1566704	0.93[ASN][1000 genomes]
rs1847201	0.93[ASN][1000 genomes]
rs2047797	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2134423	0.93[ASN][1000 genomes]
rs2134424	0.93[ASN][1000 genomes]
rs28577259	0.93[ASN][1000 genomes]
rs28713322	0.83[ASN][1000 genomes]
rs2881907	0.93[ASN][1000 genomes]
rs35134080	0.91[ASN][1000 genomes]
rs35903720	0.92[ASN][1000 genomes]
rs3929449	0.93[ASN][1000 genomes]
rs4303932	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4303935	0.92[ASN][1000 genomes]
rs4328868	0.82[ASN][1000 genomes]
rs4346600	0.93[ASN][1000 genomes]
rs4383572	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4499661	0.93[ASN][1000 genomes]
rs4499662	0.93[ASN][1000 genomes]
rs4550866	0.92[ASN][1000 genomes]
rs4579072	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4610292	0.93[ASN][1000 genomes]
rs4613519	0.93[ASN][1000 genomes]
rs4690953	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4691582	0.90[ASN][1000 genomes]
rs4691584	0.89[ASN][1000 genomes]
rs4691589	0.91[ASN][1000 genomes]
rs4691593	0.91[ASN][1000 genomes]
rs4691594	0.93[ASN][1000 genomes]
rs4691595	0.93[ASN][1000 genomes]
rs4691596	0.93[ASN][1000 genomes]
rs4691597	0.93[ASN][1000 genomes]
rs4691600	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5013975	0.93[ASN][1000 genomes]
rs67111572	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6826570	0.93[ASN][1000 genomes]
rs6849152	0.81[AMR][1000 genomes]
rs6852085	0.92[ASN][1000 genomes]
rs7659355	0.91[ASN][1000 genomes]
rs7675005	0.89[ASN][1000 genomes]
rs7682849	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755953	chr4:160557413-160626250	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160585000-160596800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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