Variant report
| Variant | rs13139874 |
|---|---|
| Chromosome Location | chr4:19315475-19315476 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1008729 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12233736 | 0.87[ASN][1000 genomes] |
| rs13104643 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13130456 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13140197 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13143908 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1490880 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34156096 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34375704 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34517311 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34571094 | 0.83[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34808833 | 0.83[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs35633946 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35881948 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35966157 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs36012850 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs36019681 | 0.87[ASN][1000 genomes] |
| rs71605358 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs71605362 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs71605366 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010078 | chr4:19079379-19386522 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv593785 | chr4:19092157-19521956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv878732 | chr4:19172031-19660947 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv829872 | chr4:19268282-19432872 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19311600-19319400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
