Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1008729	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12233736	0.92[ASN][1000 genomes]
rs13104643	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13130456	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13139874	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13140197	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1490880	0.84[ASN][1000 genomes]
rs34156096	0.84[ASN][1000 genomes]
rs34375704	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34517311	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34571094	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34808833	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35633946	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35881948	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35966157	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36012850	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36019681	0.92[ASN][1000 genomes]
rs4383617	0.81[JPT][hapmap]
rs4452430	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4540044	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66879973	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71605358	0.82[ASN][1000 genomes]
rs71605362	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71605366	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19474800-19475800	Enhancers	Hela-S3	cervix
2	chr4:19475200-19480600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:19475400-19475800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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