Variant report

Variant	rs13140979
Chromosome Location	chr4:47178350-47178351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10002281	0.85[CEU][hapmap]
rs10015561	0.82[JPT][hapmap]
rs10017326	0.85[CEU][hapmap]
rs10021932	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029262	0.85[CEU][hapmap]
rs10030659	0.83[JPT][hapmap]
rs1023775	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1023776	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11727585	0.82[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11728647	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11940530	0.85[CEU][hapmap]
rs12501039	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13125961	0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13131816	0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1372486	0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1442097	0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1442105	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17600029	0.85[CEU][hapmap]
rs1963910	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2119779	0.82[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2165611	0.82[JPT][hapmap]
rs2351300	0.85[CEU][hapmap]
rs3822110	0.85[CEU][hapmap]
rs6447539	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815891	0.82[CEU][hapmap]
rs7435958	0.85[CEU][hapmap]
rs7660544	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7673824	0.85[CEU][hapmap]
rs7691424	0.85[CEU][hapmap]
rs7691490	0.85[CEU][hapmap]
rs9999060	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4325	chr4:47142343-47187026	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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