Variant report

Variant	rs13125961
Chromosome Location	chr4:47153309-47153310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10015561	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs10021932	0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10030659	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs1023775	0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1023776	0.87[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11727585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728647	0.82[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11936304	0.83[CHB][hapmap]
rs12501039	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13131816	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13140979	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1372486	0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1442097	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1442105	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1442107	0.83[CHB][hapmap]
rs1963910	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2028524	0.82[CHB][hapmap]
rs2119779	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2165611	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4695197	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs6447539	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6819531	0.82[CHB][hapmap]
rs7660544	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs971353	0.82[CHB][hapmap]
rs971354	0.82[CHB][hapmap]
rs993777	0.87[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4325	chr4:47142343-47187026	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47147800-47154800	Weak transcription	Brain Anterior Caudate	brain

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