Variant report
| Variant | rs971353 |
|---|---|
| Chromosome Location | chr4:47102894-47102895 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:47102874..47105061-chr4:47116101..47117878,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10015561 | 0.82[CHB][hapmap] |
| rs10021932 | 0.81[CHB][hapmap] |
| rs10030659 | 0.86[CHB][hapmap] |
| rs11727585 | 0.86[CHB][hapmap] |
| rs11728647 | 0.82[CHB][hapmap] |
| rs11936304 | 0.88[CHB][hapmap];0.95[JPT][hapmap] |
| rs13105212 | 0.88[LWK][hapmap] |
| rs13125961 | 0.82[CHB][hapmap] |
| rs13131816 | 0.82[CHB][hapmap] |
| rs1372486 | 0.86[CHB][hapmap] |
| rs1442097 | 0.86[CHB][hapmap] |
| rs1442099 | 0.83[LWK][hapmap] |
| rs1442101 | 0.84[LWK][hapmap] |
| rs1442107 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1561777 | 0.81[AFR][1000 genomes] |
| rs2028524 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2119779 | 0.86[CHB][hapmap] |
| rs2165611 | 0.86[CHB][hapmap] |
| rs3906823 | 0.84[LWK][hapmap] |
| rs6447534 | 0.84[LWK][hapmap] |
| rs6819531 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7680321 | 0.84[LWK][hapmap] |
| rs7680746 | 0.84[LWK][hapmap] |
| rs971354 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv537078 | chr4:47059778-47137372 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv829922 | chr4:47093785-47261181 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
